PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1176
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 267aa    MW: 30123.8 Da    PI: 5.2828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1176genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19121171255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Gh_A06G1176 121 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAAMAYDKAALRIRG 171
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-32120180IPR001471AP2/ERF domain
CDDcd000182.07E-29121179No hitNo description
PROSITE profilePS5103224.092121179IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-23121181IPR016177DNA-binding domain
PfamPF008471.7E-14121171IPR001471AP2/ERF domain
SMARTSM003801.4E-37121185IPR001471AP2/ERF domain
PRINTSPR003672.7E-11122133IPR001471AP2/ERF domain
PRINTSPR003672.7E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAIESSGHAT SDLSILENVW ANFIGGEEAG KTSTRNEVES TSKSWVELPS LDGRQGLRRL  60
PSLGRWISMG ADAWDDLLHG IIPFGELNQS FNGETSKDIS PPRGFKVTNN CMRAERVTTR  120
HYRGVRRRPW GKYAAEIRDS SRKGARVWLG TFETAEEAAM AYDKAALRIR GPKAYLNFPL  180
EMVSKAMGID ETKTDINSGT CQYKDRACTG FKRECRDWDQ NSEYVMIEEP KLKRMATVEQ  240
VMEDGYGDVF EFQDLGSDYL ESLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28120184468ATERF1
3gcc_A3e-28120184468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755478.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A1U8PYP80.0A0A1U8PYP8_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGGorai.010G156500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-40ERF family protein