PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0879
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 497aa    MW: 54057.8 Da    PI: 6.1354
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0879genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.14.9e-25185241259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+ei+++g H he
  Gh_A06G0879 185 SDVYNWRKYGQKQVKSPKGSRSYYKCTFSDCQAKK-IECSDDTGHVIEIVNKGMHSHE 241
                  7********************************98.*********************8 PP
2WRKY98.34.9e-31360416359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+
  Gh_A06G0879 360 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTNAIIITYKGVHDHD 416
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-19180243IPR003657WRKY domain
SuperFamilySSF1182907.19E-19182243IPR003657WRKY domain
SMARTSM007741.3E-22184242IPR003657WRKY domain
PROSITE profilePS5081116.088185243IPR003657WRKY domain
PfamPF031064.6E-16186240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-31343418IPR003657WRKY domain
PROSITE profilePS5081131.904353418IPR003657WRKY domain
SuperFamilySSF1182908.5E-27354418IPR003657WRKY domain
SMARTSM007748.6E-35358417IPR003657WRKY domain
PfamPF031062.6E-23360415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAETESQALP TKRHHHHQND DSEGQEDDDD EEEEEEDGLE NEEEEEGASR VSESQGAGAA  60
PPSDDAGLKH SQLDTLPNDD PPEGLQVNST SESKEGAEFK EKVNTADQEV SPSLAVLSPE  120
APTSLSQQAP TSVTQGISSA PTPTLQGQSL YDQKVNGATV PKAKQQKSYN LKMVSVVPIV  180
KTPVSDVYNW RKYGQKQVKS PKGSRSYYKC TFSDCQAKKI ECSDDTGHVI EIVNKGMHSH  240
EPPRKNNFTR ESKIVSSAAR ASHNIQPIRI FNDSDPSTSS KESVPETTVN PERKGLFSSG  300
SDGNGDVQVK EELMSEPETK KRQAFLMKKG NTVCSDSVPK TRKKPRFVVH AAGDVGISGD  360
GYRWRKYGQK MVKGNPNPRN YYRCTSAGCP VRKHIETAVD NTNAIIITYK GVHDHDMPVP  420
KKRHGQPIAP LVAAAAPASM NNLQHKKTDG GQSPVTSTQW SVGTEGELTG EALDLGGEKA  480
IESARTLLSI GFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-26346418274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.96850.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697680.0KF669768.1 Gossypium hirsutum WRKY transcription factor 82 (WRKY82) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755101.10.0PREDICTED: probable WRKY transcription factor 32, partial
SwissprotP595831e-131WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1U8PVE50.0A0A1U8PVE5_GOSHI; probable WRKY transcription factor 32
STRINGGorai.010G113000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63382844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-126WRKY DNA-binding protein 32