PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G0833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 837aa MW: 92251.6 Da PI: 6.1836 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Gh_A06G0833 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 180.2 | 1.2e-56 | 164 | 372 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++ +s++ g+++l +++ Gh_A06G0833 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINMLSTAngGTIELLYMQ 260 789*******************************************************.8888888888*****************999********* PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ ++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ Gh_A06G0833 261 LYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppAVNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLL 358 *****************************************999899*************************************************** PP HHHHHHHHTXXXXX CS START 192 gaktwvatlqrqce 205 ++kt++a+l+++++ Gh_A06G0833 359 AQKTTMAALRHLRQ 372 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.872 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 20 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.62E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-19 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26.686 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 8.79E-81 | 158 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 6.1E-24 | 163 | 369 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.93E-38 | 163 | 375 | No hit | No description |
SMART | SM00234 | 3.7E-42 | 163 | 373 | IPR002913 | START domain |
Pfam | PF01852 | 2.5E-54 | 164 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 6.0E-51 | 696 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MMAATSACKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF 120 RQQTQNTTLA TTDTSCDSAV TSGQHHLTPQ HPPKDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLDP TRVAEILKDR PSWYRDCRAV 240 DVINMLSTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG 300 PSMPPAVNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ 360 KTTMAALRHL RQISQEISQP NVTGWGRRPA ALRALSHKLS KGFNEAVNGF TDEGWSMLES 420 DGVDDVTLLV NSSPGKMMDI NFSYSNGFPS MGNAVLCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADSGIDA YSAAAVKAGP CSLPVPRGGS FGGQVILPLA HTIEHEEFME VVKLENVGHY 540 QDMIMPSDIF LLQLCTGVDE NAVSTCAELI FAPIDGSFSE DAPIIPSGFR IIPLDSGMDA 600 SSPNRTLDLA STLEVGVAGN RATGDKSSRG STKSVMTIAF QFVYEMQLQE NVAIMARQYV 660 RSIIASVQRV ALALSPSFFG SHAGLGSPPG THEAQTLARW ICQSYRCYMG DELLKHEGSE 720 SILKVLWHHT DAVLCCSLKA LPVFTFANQA GLDMLETTLV SLQDISLEKI FDENGRKTLF 780 TEFPQVMQQG FMCLQGGICL SSMGRPVSYE RAVAWKVVND EENAHCICFT FINWSFV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677926.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A1U8IIL0 | 0.0 | A0A1U8IIL0_GOSHI; homeobox-leucine zipper protein ATHB-8-like | ||||
STRING | Gorai.010G105900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |