PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0803
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 280aa    MW: 30684.2 Da    PI: 9.7013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0803genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.2e-19144177134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Gh_A06G0803 144 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 177
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.02138174IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-20138190IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13139178No hitNo description
Gene3DG3DSA:3.30.50.109.1E-16142178IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.15E-15143180No hitNo description
PfamPF003206.9E-17144177IPR000679Zinc finger, GATA-type
PROSITE patternPS003440144169IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTPAFLNPPP SPNFPFVELK EEPHHLQLFL SVNKYEGGSS ASDQQASSSS SSSSLQSTVE  60
DQKATNAQNS SFGRNEERNY ESSAEDNKNG ITVKWMSSKM RLMKKMMNSN SNCSSSSSSS  120
RGSTDHKFQY PVTGNGEANA IRVCSDCNTT TTPLWRSGPR GPKSLCNACG IRQRKARRAM  180
EAATVAAESG AGVATDAAIL MKFKENNKEK KSRIGQFKKQ QFKAQSDYNS PYSQQSQKKL  240
YFKELASSLS KNSALQSVFP RDVEDAAILL MELSCGLIHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754922.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1U8PUU00.0A0A1U8PUU0_GOSHI; putative GATA transcription factor 22
TrEMBLA0A2P5XJT70.0A0A2P5XJT7_GOSBA; Uncharacterized protein
STRINGGorai.010G101100.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-20GATA family protein