PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0646
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 445aa    MW: 51175.9 Da    PI: 9.9718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0646genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09292334754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + ErrRR++ N+ f  Lr+llP       +K +Ka+iL    +Y+ sL
  Gh_A06G0646 292 MSERRRREKQNEYFIALRSLLPFG-----TKKDKASILFNSRQYLTSL 334
                  67********************97.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-14284354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.725285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6292334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0016298339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDAVFHLNAV SRAEYLQLIT QSIGCSYICL WSYSSLNPPN SCLIGWDGYY TEENTQPVAF  60
GLFLQHRQLI FPLENNHLVP GFTFANSLPY IELRELDLQN RGSNQTQRQF YQVNIYGSFN  120
DCIIYFCKLG TNLVLCLLQE AGINHFVVKN LYDAFDTDSL ILYNSILTQI HRDCSCQQPM  180
QALTQMQSNI QLPILGRENV SITRAILAVL TSSTSHLPRK NQNLPYNYLL NPKATAFKRY  240
VPRSTPPVRA SLRSQSILKR ATLFFRKFTL VRRGEQLVLS RRPTSNQLHR MMSERRRREK  300
QNEYFIALRS LLPFGTKKDK ASILFNSRQY LTSLKAQVAE LSKQNQLLQA RLLPAAADVG  360
GSSNESLNIR IIPLHESTSE QRIVDLRISV RGEVLIENIL MRLLEFLKHD RNVSIMSIEA  420
NNQLSEGSVN YINLRLRIEN LKRAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERRRRE
2294299RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676522.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1U8IEN50.0A0A1U8IEN5_GOSHI; putative transcription factor bHLH041
STRINGGorai.010G083900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-49bHLH family protein