PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G0628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 246aa MW: 27033.7 Da PI: 10.5549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.9e-14 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Gh_A06G0628 107 PWTEEEHRIFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 151 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.74 | 99 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-17 | 102 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-18 | 103 | 155 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 104 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 104 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.61E-9 | 107 | 152 | No hit | No description |
Pfam | PF00249 | 4.2E-11 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRKCSHCGN IGHNSRTCTT FRSAAAGMGS GVRLFGVQLQ LDVSSPSVVS NHMMKKSFSM 60 DCLSSSPSPS SLSSSRVSID ENSDKTSMGY LSDGLMGRSP DRKKGVPWTE EEHRIFLIGL 120 EKLGKGDWRG ISRNFVTTRT PTQVASHAQK YFLRQATLNK KNRRSSLFDM VRSNSMGGPP 180 SLTTIPQLDL HHRRHHRHPM PVDCSDSQTN VAPDLELTLA APRPALEENK SSPTTTTLLI 240 RPISVT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13869 | 0.0 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109852308 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393239 | 4e-91 | GQ393239.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0204 SSR marker CGR5100 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016754751.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
Refseq | XP_017644067.1 | 0.0 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q7XC57 | 4e-51 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A1U8PUD6 | 0.0 | A0A1U8PUD6_GOSHI; transcription factor MYB1R1-like | ||||
STRING | Gorai.010G081800.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-62 | MYB_related family protein |
Publications ? help Back to Top | |||
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