PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0610
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 291aa    MW: 32472.3 Da    PI: 5.6286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0610genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed+ l ++ +++G+g +W + +r+ g++R++k+c++rw++yl
      Gh_A06G0610 14 RGPWSPDEDDTLRNYLAKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding34.64.5e-1169139246
                      SSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  +    G++                           +W++Ia+ ++ gRt++++k++w++
      Gh_A06G0610  69 GGFTDEEDNIICSLYGSIGSRqvliqhlilmgdlfisennpilqyswfRWSLIAAQLP-GRTDNDIKNHWNT 139
                      569*******************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.114966IPR017930Myb domain
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-211466IPR009057Homeodomain-like
PfamPF002496.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001671.23E-81662No hitNo description
SMARTSM007178.2E-867143IPR001005SANT/Myb domain
PROSITE profilePS512948.11667145IPR017930Myb domain
PfamPF002492.3E-869139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2070145IPR009057Homeodomain-like
CDDcd001671.74E-671139No hitNo description
SuperFamilySSF466897.11E-21113142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDDTLRNYLA KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTDEEDNIIC SLYGSIGSRQ VLIQHLILMG DLFISENNPI LQYSWFRWSL  120
IAAQLPGRTD NDIKNHWNTK LKKKLFAAKS GVDQNSNNHE LTITDSSTTS VPIEAEALVN  180
GSTTTTTSSS YMINMKYQQN YDYPGLVLDQ IDQFTLPGLM EYSITSTASD NYSMSSSSQE  240
VSILCNSSSF ARENNSTAWF IDGGAEDQGI LLDQLDFEGP HYLFTASGQQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-19141457108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755508.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL28e-66MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1U8PYS50.0A0A1U8PYS5_GOSHI; transcription factor RAX2-like
STRINGGorai.010G079900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-67myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]