PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G0553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 38855.3 Da PI: 7.5611 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00046 | 221 | 259 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gh_A06G0553 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.49 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.77E-6 | 219 | 263 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-10 | 219 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-7 | 223 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MNRGVLQSSP LQQMTAGNLN WWNINTTMRP PPTTHLQPPP HFLPPSPTTL FPQFTPTPTS 60 SSSSSWNDNS QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ SLHQASNAIS 120 AVDVKQENPN SYVYGHANED FHHQANKPAW SHQIMATSSA LSPKSGVTSS SSKMLEFSGN 180 KADARQPHPE RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG 240 KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNMRQQ QPVQGERNCK FPEDPGQQLN 300 ENSMKRKGGP DQQKECDEEP KKDLRSRGLC LVPVSCTLQV GSDNGADYWA PAL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.109 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016754739.1 | 0.0 | PREDICTED: transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 1e-101 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A1U8PWT8 | 0.0 | A0A1U8PWT8_GOSHI; transcription factor bHLH68-like isoform X1 | ||||
TrEMBL | A0A2P5WX67 | 0.0 | A0A2P5WX67_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G073600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 3e-93 | bHLH family protein |
Publications ? help Back to Top | |||
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