PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0505

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 455aa MW: 50502.8 Da PI: 7.9348

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0505	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	5.1e-30	237	292	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+p+LH+rFv+a++ LG +++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gh_A06G0505 237 KSRRCWSPDLHKRFVNALQMLGVHQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 292 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.003	234	294	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-27	235	295	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.9E-17	236	295	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-26	237	292	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-7	239	290	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MASSPYELTL DCKPLTSYSM TLKSFGDQQM NGQTQKLEHV LSRLEEERLK IDAFKRKLPL 60 CMQLLANVME ASRQQLHAYQ TNQGSKAIFE EFIPLNNSHS ENTKRLENMS EKANLMTTEQ 120 LWRQTRTEMK SRSSIASPAK ADIDFNVGPK LDLDTKVRIG GAFLPLSKDR NSSSSCAGPT 180 LQPLPDLKLA SISKDMEENK CSKAENDNLD KGVLIEQGKG SSNTIDGQTT TSQPDRKSRR 240 CWSPDLHKRF VNALQMLGVH QVATPKQIRE LMKVEGLTND EVKSHLQKYR LHTRRPNLSP 300 QPAGPPTSQL VVLGGIWVPS EYATAVANTN SAALTLYGAH HPPLALHLPP HFYASPVPQE 360 FYTATTIATP ALSQQLLHHQ LHYKANSQAH SSPESDVKRT GNHSESIEDY KFESSSRKGE 420 SGDNGSDRDQ RKGLGALTLG EEGEESNGCD ITLKF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MASSPYELTL DCKPLTSYSM TLKSFGDQQM NGQTQKLEHV LSRLEEERLK IDAFKRKLPL  60
CMQLLANVME ASRQQLHAYQ TNQGSKAIFE EFIPLNNSHS ENTKRLENMS EKANLMTTEQ  120
LWRQTRTEMK SRSSIASPAK ADIDFNVGPK LDLDTKVRIG GAFLPLSKDR NSSSSCAGPT  180
LQPLPDLKLA SISKDMEENK CSKAENDNLD KGVLIEQGKG SSNTIDGQTT TSQPDRKSRR  240
CWSPDLHKRF VNALQMLGVH QVATPKQIRE LMKVEGLTND EVKSHLQKYR LHTRRPNLSP  300
QPAGPPTSQL VVLGGIWVPS EYATAVANTN SAALTLYGAH HPPLALHLPP HFYASPVPQE  360
FYTATTIATP ALSQQLLHHQ LHYKANSQAH SSPESDVKRT GNHSESIEDY KFESSSRKGE  420
SGDNGSDRDQ RKGLGALTLG EEGEESNGCD ITLKF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9994	6e-43	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX605172	2e-45	JX605172.1 Gossypium hirsutum clone NBRI_GE44715 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016755502.1	0.0	PREDICTED: uncharacterized protein LOC107963542
TrEMBL	A0A1U8PWH3	0.0	A0A1U8PWH3_GOSHI; uncharacterized protein LOC107963542
STRING	Gorai.009G022100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7134	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-99	G2-like family protein