PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0349

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 416aa MW: 46091.6 Da PI: 9.7178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0349	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	176	198	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Gh_A06G0349 176 SCPECGEIFMKAENLELHQAVrH 198 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.411	175	203	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.99E-22	200	415	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.3E-19	202	414	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAGPTHQRKP SKDNYHNQKK KRRPQPQPQP QKNDKPPSNW SLVKGLFFGK PQQQQQHQQQ 60 QQQQQQQQQQ REHVVVDETG KKCKKMRCSG SLCSNTKIME RPVTASPELN KKRASLGSVK 120 APVQHEPNGV VVSSSNVGSF RGLPFTRFSG CYECRMVVDP VLGMAKDPSL RTTIRSCPEC 180 GEIFMKAENL ELHQAVRHAV SELGSEDTSK NIVEIIFQSS WLKKQAPICQ IDRILKVHNT 240 PKTISKFEEY RDSIKSKATK HPKKHPRCIA DGNELLRFHC TTFACSLGLN GSSNLCNSSP 300 NCNVCSIIKN GFKVAQELGN GGGPNGKGIL TTATSGKAHD MAAAVEEDNG KQENRAMLVC 360 RVIAGRVKKN MEGSLEDYDS VTVAGGDVGA YSNLDELYVF NPKAILPCFV VIYRGF

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAGPTHQRKP SKDNYHNQKK KRRPQPQPQP QKNDKPPSNW SLVKGLFFGK PQQQQQHQQQ  60
QQQQQQQQQQ REHVVVDETG KKCKKMRCSG SLCSNTKIME RPVTASPELN KKRASLGSVK  120
APVQHEPNGV VVSSSNVGSF RGLPFTRFSG CYECRMVVDP VLGMAKDPSL RTTIRSCPEC  180
GEIFMKAENL ELHQAVRHAV SELGSEDTSK NIVEIIFQSS WLKKQAPICQ IDRILKVHNT  240
PKTISKFEEY RDSIKSKATK HPKKHPRCIA DGNELLRFHC TTFACSLGLN GSSNLCNSSP  300
NCNVCSIIKN GFKVAQELGN GGGPNGKGIL TTATSGKAHD MAAAVEEDNG KQENRAMLVC  360
RVIAGRVKKN MEGSLEDYDS VTVAGGDVGA YSNLDELYVF NPKAILPCFV VIYRGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	22	KKKRR
2	18	23	KKKRRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754386.1	0.0	PREDICTED: uncharacterized protein LOC107962489
TrEMBL	A0A1U8PTC3	0.0	A0A1U8PTC3_GOSHI; uncharacterized protein LOC107962489
STRING	Gorai.010G048000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-81	C2H2-like zinc finger protein