PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0307
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 351aa    MW: 39017.4 Da    PI: 6.6859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0307genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20163212255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Gh_A06G0307 163 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 212
                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.32E-34162222No hitNo description
SMARTSM003807.0E-38163226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-32163221IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-23163221IPR016177DNA-binding domain
PROSITE profilePS5103223.143163220IPR001471AP2/ERF domain
PRINTSPR003673.3E-11164175IPR001471AP2/ERF domain
PfamPF008473.5E-14164212IPR001471AP2/ERF domain
PRINTSPR003673.3E-11186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAATTDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSSSY SPSPSSYSPS PSPSPSPSTS  60
YLSLSSSQTQ PNFYADGCYF PAVDQYPGVQ QPQIGSTIGL NNLTQAQINQ IQAQFLFQNN  120
QPSYLYQNPQ LNANPNTNHM LSFLSPKPVP MKQMGSRPKP TKLYRGVRQR HWGKWVAEIR  180
LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRHQGSHIG GEFGEYKPLH  240
SSVDAKLQAI CESLELNQKQ ANNKKTKKLS KENKVQLAEP EEKTVKVENS PSSLSPVLSE  300
NEGSTESSPL SDLTFSDFNE QPWPEVITSS ESFMLSKYPS YEIDWDSILK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22162220160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26960.0leaf| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754326.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E41e-101RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1U8PT600.0A0A1U8PT60_GOSHI; ethylene-responsive transcription factor RAP2-13-like
STRINGGorai.010G043200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-78related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]