PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G0188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29986.9 Da PI: 8.6444 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + Gh_A06G0188 12 KGPWSPEEDEALQRLVQTYGPRNWTLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a+++ G++ W+tIar ++ gRt++ +k++w++ Gh_A06G0188 66 PFTPEEDDTIIRAHARVGNK-WATIARLLN-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.191 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-33 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-16 | 14 | 56 | No hit | No description |
SMART | SM00717 | 1.8E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.973 | 64 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.14E-12 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 5.0E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MASTRKDMDR IKGPWSPEED EALQRLVQTY GPRNWTLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFTPE EDDTIIRAHA RVGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCLSMTEGF 120 NDDSPQPLKR SASLGTGNPS SPSGSDLSDS SLPAPSPAFK TGSLVPLSQH VETASSATDP 180 PTLLSLSLPG SDFTEPVSPP GFNPTQVTTQ ASAPVPAPVE KQFFSAEFFA VMKEMIRKEV 240 RSYMAGIEQN ELCLQTEAIR NAVVKRIGIS KIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-42 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-42 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9588 | 0.0 | boll| leaf| ovule| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586078 | 1e-51 | JX586078.1 Gossypium hirsutum clone NBRI_GE19816 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016717753.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 6e-94 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A1U8LWF2 | 0.0 | A0A1U8LWF2_GOSHI; transcription factor MYB44-like | ||||
STRING | Gorai.010G023500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-73 | myb domain protein 73 |
Publications ? help Back to Top | |||
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