PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0174
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23883.2 Da    PI: 9.8063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0174genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-1786135255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gh_A06G0174  86 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 135
                  69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.12886143IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2186144IPR016177DNA-binding domain
SMARTSM003807.3E-3686149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3087144IPR001471AP2/ERF domain
PfamPF008471.9E-1087135IPR001471AP2/ERF domain
PRINTSPR003671.1E-118798IPR001471AP2/ERF domain
CDDcd000182.06E-2787145No hitNo description
PRINTSPR003671.1E-11125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSANFVFKYI RSTWRPCPDD KLAAKWETIL QFISPSTLCL CIYISLVFGF FWGVPAMEGD  60
CCSSSTSSST SGEKPKAERT QQKEKPYRGI RMRKWGKWVA EIREPNKRSR IWLGSYTTPV  120
AAARAYDTAV FYLRGPSARL NFPDLIEKDN KLRDISAASI RKKAAEVGAK VDALQTSSVY  180
HHGGSSSDSP NNTRRVLLKP DLNKYPEVSD ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1583143263ATERF1
3gcc_A3e-1583143263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893126e-68JX589312.1 Gossypium hirsutum clone NBRI_GE23985 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452408.11e-134PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X1
SwissprotO221742e-48ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0D2R0P21e-132A0A0D2R0P2_GOSRA; Uncharacterized protein
STRINGGorai.010G021900.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-50DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]