PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G3908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 814aa MW: 89885.6 Da PI: 7.1062 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 176 | 277 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++ +g ++ p++ ae++ ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el+ Gh_A05G3908 176 FCKTLTASDTSIHGGFSAPRRAAEDCfprldYKQTRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSVFVSQKNLIAGDAVLFL--RGEDGELR 271 99****************************8444556789************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Gh_A05G3908 272 LGIRRA 277 ***996 PP | |||||||
2 | Auxin_resp | 115.7 | 4e-38 | 302 | 383 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stksvF+v+Y+Pras++eFv++++k+ k+++++++ G Rf+m+fe++d +err+ G+v+g+ d+dp++WpnSkWr+L Gh_A05G3908 302 VANALSTKSVFQVCYCPRASHAEFVIPFQKYIKSITNPICTGARFRMKFEMDDLPERRCNGVVTGTGDSDPYKWPNSKWRCL 383 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-38 | 167 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.93E-42 | 168 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.54E-22 | 174 | 276 | No hit | No description |
PROSITE profile | PS50863 | 12.393 | 176 | 278 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-21 | 176 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-21 | 176 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-31 | 302 | 383 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 8.5E-10 | 675 | 758 | No hit | No description |
Pfam | PF02309 | 2.4E-6 | 675 | 764 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 20.708 | 679 | 761 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MEIDLNHALN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSSTS CTSNSGSPPC 60 SSSIDLELWH ACAGPLTSLP KKGNVVVYFP QGHLEQLALA FPFSPLDTFD LPSQIFCKVM 120 NVQLLANKEN DEVYTQVTLL PQPELRGHNL GSKQLDEVEA DEHADGSPSK PTSHMFCKTL 180 TASDTSIHGG FSAPRRAAED CFPRLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL 240 LTTGWSVFVS QKNLIAGDAV LFLRGEDGEL RLGIRRAVRP RTGLPDSIIA QHNSYPKVLS 300 AVANALSTKS VFQVCYCPRA SHAEFVIPFQ KYIKSITNPI CTGARFRMKF EMDDLPERRC 360 NGVVTGTGDS DPYKWPNSKW RCLMVRWDDD IASDHQERVS PWEIDPSVFP PPLIIPSPFK 420 LKKLRTGLQT AALDTPVTGG VGYLDFEEST RSSKVLQGQE NVGFISPVYG CGTVNHPLHF 480 EMQSMAHQSL ASTGLGKSNI SDFMRAHSSS HTGFAETNRF PKVLQGQEIC SLRSLTHKAD 540 LNLGVWAKTN HGCNSFNMNQ APNTNFYPEG LRNMYFPYNE FYRAGQEPKM CSYASTLPRG 600 NVLFNASSIK PGVSVDDIRK PNPPNDHKPM ENIPSPGFGK KLRNQQDECY KGNVSGCKLF 660 GFSLTAESPT LNSQNSGKRS CTKVHKQGSL VGRAIDLSRL YGYKDLITEL EHLFGMEGLL 720 SAPDKGWRVL YTDRDNDVMV VGDDPWHEFC DVVSKIHIYT GEEVEKMTIG MGSDETQSCL 780 EEAAVIMEAS KSSSVGQPDS SPTVMRGMKI SACF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-118 | 54 | 406 | 7 | 354 | Auxin response factor 1 |
4ldy_B | 1e-118 | 54 | 406 | 7 | 354 | Auxin response factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18687 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ627772 | 0.0 | KJ627772.1 Gossypium hirsutum auxin responsive factor ARF5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016750756.1 | 0.0 | PREDICTED: auxin response factor 4-like isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A1U8PHR3 | 0.0 | A0A1U8PHR3_GOSHI; Auxin response factor | ||||
STRING | Gorai.009G078800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |