PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G3795

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 433aa MW: 47850.5 Da PI: 7.0902

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3795	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	320	358	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Gh_A05G3795 320 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 358 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.458	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-11	318	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.17E-5	318	362	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-9	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEPENAHHQH HLQDQLLGSS SLPISPCYGV SSTHSWTPTT ALNSSEFNPS CNGDILHSRL 60 KNDMLVSPQN SSMIQDWTNN EGSFTTHSCH GLHLPKIKDQ LSESITRFTD ILSDSTSSVI 120 DSHHLPPPNY LKNNEQRDLS DLSQKLLLKT ISSGFPMFST GPEFYSTTQN CSIPRNSFLP 180 SRGSFSQIYP SINISSLNQA SSSLNIPSSF DMNMEALDLL NPARFSRSSR FSYPSEDHDN 240 LGIYKEISPS FGLHHHHNLQ QSSQRPVAYT PSKTSPFPTE ITEAKRPSIL PETKPAAPTT 300 TTAKKSRLES RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ 360 VETLSVPYMK LSRNKTSKSR QGGSTMEDES EEDEARPDLR SRGLCLVPLS CMSYMTSDSG 420 GGGIWPPPPN FTG

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEPENAHHQH HLQDQLLGSS SLPISPCYGV SSTHSWTPTT ALNSSEFNPS CNGDILHSRL  60
KNDMLVSPQN SSMIQDWTNN EGSFTTHSCH GLHLPKIKDQ LSESITRFTD ILSDSTSSVI  120
DSHHLPPPNY LKNNEQRDLS DLSQKLLLKT ISSGFPMFST GPEFYSTTQN CSIPRNSFLP  180
SRGSFSQIYP SINISSLNQA SSSLNIPSSF DMNMEALDLL NPARFSRSSR FSYPSEDHDN  240
LGIYKEISPS FGLHHHHNLQ QSSQRPVAYT PSKTSPFPTE ITEAKRPSIL PETKPAAPTT  300
TTAKKSRLES RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ  360
VETLSVPYMK LSRNKTSKSR QGGSTMEDES EEDEARPDLR SRGLCLVPLS CMSYMTSDSG  420
GGGIWPPPPN FTG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586635	1e-137	JX586635.1 Gossypium hirsutum clone NBRI_GE20500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749056.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBL	A0A1U8PCZ7	0.0	A0A1U8PCZ7_GOSHI; transcription factor bHLH110-like isoform X1
STRING	Gorai.009G199600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	6e-77	bHLH family protein