PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G3791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 381aa MW: 43284 Da PI: 7.1558 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1e-16 | 34 | 109 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++l +p kfa+++ +k + t+t++ +sg W++ l + +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f v Gh_A05G3791 34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109 57899******888755..8889***************..99999**************************9886776..44 PP | |||||||
2 | B3 | 49.9 | 5.9e-16 | 265 | 346 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f v++p +v ++ + +p +++h +k+++ +++l + r+W+ +++y k+++ l++GWk Fv++n+L e D++vF+ + Gh_A05G3791 265 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEHDVCVFEPS 346 778999********************999655..5664.4688*******9977777778**********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.08E-20 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.789 | 22 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.90E-18 | 24 | 112 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-19 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-14 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 35 | 107 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.983 | 265 | 363 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-19 | 265 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-18 | 265 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.1E-13 | 265 | 363 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.34E-20 | 265 | 361 | No hit | No description |
Pfam | PF02362 | 1.8E-13 | 265 | 346 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGDSCKDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP 60 SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK 120 GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHNSSRCGL ESSPEKSTNN EIGTAPSRGP 180 INTAPTNKKT RYAGSSTKSI YARHLGRKER CTFPGEVKFE TEFDGAIMDE GDFSPPPTCD 240 NGPLTQFEKA NAVAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL 300 RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEHDV CVFEPSNIGG KSIILDVIII 360 RVMDSAVQAP VPLTITHPAS C |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.25728 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016666647.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A1U8HKR4 | 0.0 | A0A1U8HKR4_GOSHI; B3 domain-containing protein REM16-like isoform X1 | ||||
STRING | Gorai.009G207400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-79 | B3 family protein |