PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3650
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 234aa    MW: 26075.3 Da    PI: 6.5187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3650genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-19954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W+ I++ ++ gR++k+c++rw + 
      Gh_A05G3650  9 KGSWSPQEDANLIKLVEQHGPRNWSMISSSIP-GRSGKSCRLRWCNQ 54
                     799*****************************.***********985 PP
2Myb_DNA-binding521.6e-1663105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +++a++ +G++ W+tIar ++ gRt++ +k++w++ 
      Gh_A05G3650  63 PFTAAEDAVIIQAHAVHGNK-WATIARLLP-GRTDNAIKNHWNST 105
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.307459IPR017930Myb domain
SuperFamilySSF466891.09E-307102IPR009057Homeodomain-like
SMARTSM007178.0E-16857IPR001005SANT/Myb domain
PfamPF002497.3E-18954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241062IPR009057Homeodomain-like
CDDcd001671.06E-141153No hitNo description
SMARTSM007179.7E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129421.62560110IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2363109IPR009057Homeodomain-like
PfamPF002491.4E-1363105IPR001005SANT/Myb domain
CDDcd001676.14E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MINGGDRVKG SWSPQEDANL IKLVEQHGPR NWSMISSSIP GRSGKSCRLR WCNQLSPAVQ  60
HRPFTAAEDA VIIQAHAVHG NKWATIARLL PGRTDNAIKN HWNSTLRRKR ETELSSGSSE  120
SNSGVKRPSQ DASESESGNK KQCLGLVLQE QEQEQEHENV GMLEPKTLLT LSPPGENMEE  180
EAVVVVVKSE ESGEEKQRAM VDETACLLSI MQRMIKEEVR SYIDKIIADQ NPLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3981093104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146880.0JX614688.1 Gossypium hirsutum clone NBRI_GE58266 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752886.11e-172PREDICTED: transcription factor MYB44-like
SwissprotO231603e-53MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1U8PNY11e-171A0A1U8PNY1_GOSHI; transcription factor MYB44-like
STRINGGorai.012G078200.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.17e-56myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]