PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G3639

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 447aa MW: 50822 Da PI: 8.6595

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3639	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	269	311	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR++iN+ +++Lr l+Pk + K++ +iL+ A+eYI +L Gh_A05G3639 269 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 311 69*******************66......*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.3E-9	11	112	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	4.01E-10	260	316	No hit	No description
SuperFamily	SSF47459	1.44E-14	261	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.081	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	269	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	269	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MRGFDRAVEW LRPFVDSKGW DFCVVWKLGD DPSRFIEWKD CCCSACFNVK VKKDESQKPF 60 CRDGHSQHSI KSKACEALSH FPSAISLYAG IHGEVAMSNQ PSWVNHGNPS GSQSSNVMPK 120 DQNLIELVTS QCNAVLKQEI TTGENYTKAN LDKWYNLPFS ISLSTFVPRI ELIPPISDSN 180 SHHSLDGSHS GSSPSIEHPP FASDSAYISQ DEQFKKLIGT YYGTNRLRCS KNVPEQQARF 240 PPDGNESIKD KMRTTKQPAK EKFHSKNLVM ERNRRKKIND QLFKLRALVP KISKMDRTAI 300 LTDAIEYIGD LLEEKKKLEN ELMKIDEENC EKSNLELKST LLDKSPKDNM SAVKPNQVSS 360 SLAEMAKMEV HVEVNQLTKR EFLIKLYYEH KRGSFAKLME GIDSLGLQVV DANVTTFNGK 420 VLSMFKVEAN RDFQSRKLRD LLTNLMK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MRGFDRAVEW LRPFVDSKGW DFCVVWKLGD DPSRFIEWKD CCCSACFNVK VKKDESQKPF  60
CRDGHSQHSI KSKACEALSH FPSAISLYAG IHGEVAMSNQ PSWVNHGNPS GSQSSNVMPK  120
DQNLIELVTS QCNAVLKQEI TTGENYTKAN LDKWYNLPFS ISLSTFVPRI ELIPPISDSN  180
SHHSLDGSHS GSSPSIEHPP FASDSAYISQ DEQFKKLIGT YYGTNRLRCS KNVPEQQARF  240
PPDGNESIKD KMRTTKQPAK EKFHSKNLVM ERNRRKKIND QLFKLRALVP KISKMDRTAI  300
LTDAIEYIGD LLEEKKKLEN ELMKIDEENC EKSNLELKST LLDKSPKDNM SAVKPNQVSS  360
SLAEMAKMEV HVEVNQLTKR EFLIKLYYEH KRGSFAKLME GIDSLGLQVV DANVTTFNGK  420
VLSMFKVEAN RDFQSRKLRD LLTNLMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603435.1	0.0	PREDICTED: transcription factor bHLH90 isoform X3
TrEMBL	A0A0D2QSR3	0.0	A0A0D2QSR3_GOSRA; Uncharacterized protein
STRING	Gorai.009G337700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	5e-52	bHLH family protein