PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3576
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 674aa    MW: 74870.3 Da    PI: 7.227
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3576genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.3e-23120220198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +++ 
  Gh_A05G3576 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIHAKDVHGNIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAENGD 213
                  89****************************986545445..8************************************************..348888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                   +v+++r
  Gh_A05G3576 214 ICVGIRR 220
                  8**9998 PP
2Auxin_resp113.61.8e-37276359183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+++a+++++FevvY+Prast+eF+vk+++v++a+++++ +GmRfkmafetedss++++ +Gt++  + +dp+rWpnS+Wr+L+
  Gh_A05G3576 276 AVSRAANGQPFEVVYYPRASTPEFCVKASSVRAAMQTHWYPGMRFKMAFETEDSSRISWfMGTISTAQVVDPIRWPNSPWRLLQ 359
                  67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-37115224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-22118220No hitNo description
SMARTSM010196.1E-21120222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464120222IPR003340B3 DNA binding domain
PfamPF023629.2E-21120220IPR003340B3 DNA binding domain
PfamPF065071.5E-32276359IPR010525Auxin response factor
PROSITE profilePS5174512.458588666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MITVMDCRKE VVKTSEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHTE HANRNVDFGS  60
LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPLRENDFG YEDGFDGNIG MENLEKPPSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNIW KFRHIYRGTP  180
RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDICVGIRR VKRGIGSGHD YPSSWNLADG  240
SSGYSPLLRE GESKSMKNDS NGDLRGRIRP ENVIEAVSRA ANGQPFEVVY YPRASTPEFC  300
VKASSVRAAM QTHWYPGMRF KMAFETEDSS RISWFMGTIS TAQVVDPIRW PNSPWRLLQV  360
AWDEPDLLHD VKCVSPWLVE LVTNIPAIHL NPFSPPRKRM RLTQHPDLSL LGQIPVPSFS  420
DSTFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDVRSSK LQSGLFPHGF NQLGHTIPPM  480
GHSSDYGNNR NISSSHTMGN LTQSLKESNE IKTPHILLFG QLIFCEQQVS QSCSDTIGNS  540
SSNGNTEKTV ISSDASGSAL HQNARENSSD EGSPWYKELP KTNMGLETGH SQVFTESENV  600
GRTLDLSALR SYEELHGKLA NMFRVESSDM LRNMFYRDAA ASVKHTGDEP FSEFLKTARR  660
LTVLTDSGSD NMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78138033388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.237130.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686066.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8J6U40.0A0A1U8J6U4_GOSHI; Auxin response factor
STRINGGorai.012G004800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]