PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3541
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1107aa    MW: 122617 Da    PI: 6.7261
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3541genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22137239199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F  +++++++l
  Gh_A05G3541 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQTPA-QELVARDLHENVWKFRHIYRGKPKRHLLTTGWSLFVSGKRLFAGDSVLFI-SRNETQQL 232
                  99*****************************9444443.48************************************************.55599999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Gh_A05G3541 233 LLGIRRA 239
                  ****997 PP
2Auxin_resp115.83.8e-38264347183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras  eFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  Gh_A05G3541 264 AAHAAANNSPFTVFYNPRASLFEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWRNLQ 347
                  79********************************9879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-40128267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-38128253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-18136238No hitNo description
PROSITE profilePS5086311.688137240IPR003340B3 DNA binding domain
PfamPF023621.2E-20137239IPR003340B3 DNA binding domain
SMARTSM010192.1E-20137240IPR003340B3 DNA binding domain
PfamPF065075.8E-34264347IPR010525Auxin response factor
PfamPF023091.3E-69941080IPR033389AUX/IAA domain
PROSITE profilePS5174527.029951079IPR000270PB1 domain
SuperFamilySSF542777.55E-710081073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MNVVAAGVGS TANAAAPGSA EGEAPERRHI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSSFDKEAL  120
LRSDLSLKSN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QTPAQELVAR  180
DLHENVWKFR HIYRGKPKRH LLTTGWSLFV SGKRLFAGDS VLFISRNETQ QLLLGIRRAN  240
RQPANLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASLFEFVIP LAKYYKAVYN  300
HQISPGMRFR MMFETEESGT RRYMGTITGI SDIDPVRWKN SQWRNLQVGW DESTAEERRN  360
RVSIWEIEPV TAPFFICPSP LFRSKRPRQP GMLADEYSDL DNLFKRPMPW LGDDICLKDS  420
DAHPGLSLVQ WMNMQQNPLL ANSMQPNFMQ SLAGSTMQNF DGADLSHQMG LSAPQMPQPN  480
NLQFNAHRLP QKVQQLDQVP KLPSTMNSLG SIIQPQQLND MTQQSRQNLV ARTLPSSQVL  540
QPQALVRSNN ILHQQQTSNP THQLPLSLPQ NLQQQQQQHL VGPNHPQNLM HSQLPDPLNQ  600
HLQVPDNQVQ FQLMQKLQQQ QQLLLAQQSA LQQPGQLAQP QDQQRQLLDA SQSFSSSVTA  660
SQVLEMPQNI PTLLPQSNVA PQQMPKNNSQ ANVWFSQPPL QSKVQQQQTG MLPEVPGLVG  720
PFQTTATNQF STAVSSVMTS AAVAAPSVIT DDNPSCSTSP STNCPSVLQP MIDSKVHRSA  780
GLGDDISQSA ATVLNANALE TMSTKANMVK EQQQKSVKPL LNISKSQNQG SFAPQNCING  840
ATALADCLDT SSSTTSVCLS QSDAHLHQNT LSYNPQTMLL RDTSQEGEVQ AYPRNNVSYG  900
NNMDSQIEMP MNSDTLSAKG MMGLGKDFSN HLSSEGILAS YENPKDAQQE LSSSMVSQPY  960
RVPDMAFNSI DPTINHSSFI NRNAWTPPSQ FQRLRTYTKV YKRGAVGRSI DITRYSGYDE  1020
LKQDLARRFG IEGQLEDRGR VGWKLVYVDH ENDVLLVGDD PWEEFINCVR CIKILSPQEV  1080
QQMSMDGEFG NSVLPNQDCS SSGNGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1593036851388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34200.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686122.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_016686123.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_016686124.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1U8JBQ90.0A0A1U8JBQ9_GOSHI; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19