PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3523
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 297aa    MW: 32359.4 Da    PI: 8.76
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3523genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA995e-31148204158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  Gh_A05G3523 148 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 204
                  699***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-36146207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631147207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-21150172IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-25150204IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860152172IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-21181204IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSESLNLKMG IVPQHFHNAK QLSFQFQDQD SSSTQSTGQS YPEAASVGDS NLYGQSSISA  60
SSGGNETPGK LVEHHAKLAS SMGTQEYVFS PSQVDYSKSI THIPLHCAEP YFGGAVTAVC  120
PPPAMSHHPC MLAMLPARVP LPLELTEDET IYVNAKQYGA ILRRRQYRAK LEAQNKLIKV  180
RKPYLHESRH LHALKRARGN GGRFLNTKKL QESKPIPTSH GLDASRSPQL HLCANMSNQL  240
ENYKDAASTT TCSDVTSASN GDEMLQQRDF RFSGYSSLIA GAMRGSGGNL HHLSGCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-19148208262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612919.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH22e-75NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0B0NI930.0A0A0B0NI93_GOSAR; Nuclear transcription factor Y subunit A-3-like protein
TrEMBLA0A2P5WSQ20.0A0A2P5WSQ2_GOSBA; Uncharacterized protein
STRINGGorai.012G010900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-70nuclear factor Y, subunit A3