PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3514
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 586aa    MW: 64639.8 Da    PI: 7.2757
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3514genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.4e-09262322155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  +   g  ++  +      ++ +e+Aaka++ a++k++g
  Gh_A05G3514 262 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgrQGEGSSGYDKEEKAAKAYDLAALKYWG 322
                  78*******************6544544673334444445588899*************98 PP
2AP2483e-15365416155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_A05G3514 365 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416
                  78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-12262332IPR016177DNA-binding domain
PfamPF008472.6E-6262322IPR001471AP2/ERF domain
CDDcd000181.39E-15262332No hitNo description
Gene3DG3DSA:3.30.730.103.2E-10263331IPR001471AP2/ERF domain
SMARTSM003806.9E-19263336IPR001471AP2/ERF domain
PROSITE profilePS5103215.33263330IPR001471AP2/ERF domain
PRINTSPR003671.4E-6264275IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18365426IPR016177DNA-binding domain
CDDcd000183.03E-24365426No hitNo description
PfamPF008476.0E-10365416IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18366424IPR001471AP2/ERF domain
SMARTSM003803.6E-34366430IPR001471AP2/ERF domain
PROSITE profilePS5103219.006366424IPR001471AP2/ERF domain
PRINTSPR003671.4E-6406426IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSNWLGFSLT PDLRIDESFG REDHGGFPSV MPLRSDGSLC VVDPFRRSSI AADEDWRYEN  60
GIGSATANEQ GPKLEDFLGC YSNSPSQETK AYCGTHENQN TVPSPTRINV NVAPNYSSSG  120
DAEAAENFTN PSSFIQTYRN YNENPQTLMA GGHSLQQCDP NPNHNQRSGV HHVPFESATS  180
VSGFKSWLRQ TPFPGGKASG NETNNNFNFQ ALSLTMSPTS RNGFPAIAPL EVVDNRKRPV  240
GKNLTRESVP RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGEGS  300
SGYDKEEKAA KAYDLAALKY WGPTTHINFP LSTYEKELEE MKNMTRQEFV AHLRRKSSGF  360
SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV  420
TNFDISRYDV KRICSSSTLI GGELAKRSPK DTASIAPEDY NSCASSASPQ PLLAIPSGEA  480
SDELADMVWT ANSDEQQQHQ STNTNNDASL ANSSSRNSSN PQSPKGSIGL ASDKFGIGGD  540
YSHHGYFSLK GSKYEDGNSE TDNSNENRLG NLGLVHKIPM FALWNE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460575.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0D2V0D80.0A0A0D2V0D8_GOSRA; Uncharacterized protein
STRINGGorai.012G011800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]