PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A05G3240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 196aa MW: 21717.6 Da PI: 8.7127 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.3 | 5.6e-31 | 21 | 75 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrYkeClkNhA+++Gg+a+DGCgEfmp+ geeg+ +al C+AC+CHRnFHR+e+e Gh_A05G3240 21 VVRYKECLKNHAVAIGGNATDGCGEFMPN-GEEGSLEALICSACNCHRNFHRKETE 75 69**************************8.999********************987 PP | |||||||
2 | Homeobox | 14.1 | 8e-05 | 129 | 185 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+f++ q e + ++ e + ++++++ ++ +++g++ r+ kvW +N ++ Gh_A05G3240 129 KRFRTKFSQAQKEKMLSFAEkagwRIQKLDENVVQQFCQEIGIKRRVLKVWMHNNKQ 185 789***********987655666678****************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 22 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.8E-29 | 22 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-30 | 23 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.926 | 24 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-29 | 119 | 188 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.09E-19 | 122 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-26 | 128 | 185 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MSNNKPISTS GDGGDNCNKV VVRYKECLKN HAVAIGGNAT DGCGEFMPNG EEGSLEALIC 60 SACNCHRNFH RKETECSGCC PSEFGGELML GHLQSYMLRS SPQPMTVSYK GGGSIPSETN 120 EKDDGKVRKR FRTKFSQAQK EKMLSFAEKA GWRIQKLDEN VVQQFCQEIG IKRRVLKVWM 180 HNNKQSFANK NNVSAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 129 | 186 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23792 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726068.1 | 1e-146 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_017614752.1 | 1e-146 | PREDICTED: zinc-finger homeodomain protein 4-like isoform X2 | ||||
Swissprot | O64722 | 8e-64 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A1U8MKL4 | 1e-145 | A0A1U8MKL4_GOSHI; zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A2P5WAC8 | 1e-145 | A0A2P5WAC8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G046200.1 | 1e-139 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02540.1 | 3e-66 | homeobox protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|