PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G3186 | ||||||||
Common Name | WRKY25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 516aa MW: 56377.9 Da PI: 8.4467 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 227 | 284 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa ++++ei+Y+g Hnhek Gh_A05G3186 227 EDGYNWRKYGQKPIKGCEYPRSYYKCTYLNCPVKKKVERSA-YGQITEIIYKGAHNHEK 284 8****************************************.9**************85 PP | |||||||
2 | WRKY | 107.3 | 7.9e-34 | 400 | 458 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ Gh_A05G3186 400 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 458 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.974 | 221 | 285 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.1E-27 | 223 | 286 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 225 | 285 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-34 | 226 | 284 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-23 | 227 | 283 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-37 | 385 | 460 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-29 | 392 | 460 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 395 | 460 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-40 | 400 | 459 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 401 | 458 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MAEKRTRSKL SAPTRPSITL PPKPAMDGLF SSGLGLSPGP MTLVSSFFSD LDSTENRSFS 60 QLLASAMTSP GARLPHASMD GSLMEVGFKD GGEKSPGFKH NRPLNFDSPL FTAPTGLTPS 120 GLLNSPSFFC LSPQSPFGIS HRQALAQVTA QAALAQSQVH PQTEYQALTV SAPSESLIRH 180 PSFTPEETSQ LMPPLASEPQ SSAIEYSEAS QSDRKNQLPI AVDKPAEDGY NWRKYGQKPI 240 KGCEYPRSYY KCTYLNCPVK KKVERSAYGQ ITEIIYKGAH NHEKPQQNKQ AKGGSDGNAN 300 SQANPEFGSQ VAALNSNKLS ETMSSHSILG KNSESTQAAE LPGSSDSEEG CDEESREERD 360 DDEPNLKRRN TAPEAAVVLS HKTVTEPKII VQTRSEVDLL DDGYRWRKYG QKVVKGNPHP 420 RSYYKCTSAG CNVRKHVERA STDPKAVITT YEGKHNHDVP AARNSSHNMV NNSLSQTKPH 480 KVVAENQNHS LLKAMDFGNN GQGPAVLRLK EEQIRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-40 | 227 | 461 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-40 | 227 | 461 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21864 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF899343 | 0.0 | JF899343.1 Gossypium hirsutum WRKY transcription factor (WRKY25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313778.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-142 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | M9NYP5 | 0.0 | M9NYP5_GOSHI; WRKY transcription factor | ||||
STRING | Gorai.012G051500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-121 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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