PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3160
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 378aa    MW: 42586.5 Da    PI: 7.9064
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3160genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1167123155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Gh_A05G3160  67 SRFRGVSRHRWTGRYEAHLWDkLSWNIsqKKKGKQ-GAYDEEEAAARAYDLAALKYWG 123
                  789******************88887784446666.9*******************98 PP
2AP253.17.9e-17166217155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Gh_A05G3160 166 SKYRGVARHHNNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 217
                  89****************99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1467133IPR016177DNA-binding domain
PfamPF008476.5E-967123IPR001471AP2/ERF domain
PROSITE profilePS5103218.08368131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1268132IPR001471AP2/ERF domain
SMARTSM003803.8E-1868137IPR001471AP2/ERF domain
PRINTSPR003672.6E-56980IPR001471AP2/ERF domain
CDDcd000182.65E-25166227No hitNo description
SuperFamilySSF541714.25E-18166227IPR016177DNA-binding domain
PfamPF008472.4E-12166217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18167226IPR001471AP2/ERF domain
SMARTSM003809.6E-27167231IPR001471AP2/ERF domain
PROSITE profilePS5103218.979167225IPR001471AP2/ERF domain
PRINTSPR003672.6E-5207227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDMEMGMVND EQCLGLGDSQ NVQVEGIRCA KRRRRDPAVS VAFDNRDGHQ QRNAAATATA  60
TTVKRSSRFR GVSRHRWTGR YEAHLWDKLS WNISQKKKGK QGAYDEEEAA ARAYDLAALK  120
YWGTSTFTNF PISDYAKEIE IMQTLTKEEY LASLRRKSSG FSRGVSKYRG VARHHNNGRW  180
EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI RWLKPNESLP  240
MAVEPEPVIL PSQASTPGEE SKPSVNHSST ADYLNSSPKQ VVESKIHVMN SNKCSSTTAL  300
GLLLRSSIFR DLVEKNVANV CEDESGSPDE NEEKNKHLAG NDDEFCGLFY NGIGTEFPFF  360
RSSMKDTMEL QERGSSFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752705.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8PNE70.0A0A1U8PNE7_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060
STRINGGorai.012G056300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-76AP2 family protein