PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A05G3158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 553aa MW: 60063.5 Da PI: 5.3863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.2e-30 | 234 | 293 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_A05G3158 234 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAsGCPVRKQVQRCAEDMSILITTYEGNHNHP 293 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-32 | 219 | 295 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-27 | 227 | 295 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.367 | 229 | 295 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-36 | 234 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 235 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 553 aa Download sequence Send to blast |
MEVLLMKMPT TDADIAQAIA CHQEDCSPEA KKTENRRKLH ENADLNSSSP SDEDLVDSKE 60 EDELESAKAE MGEVMEENER LKKMLEKIQE NYKSLQLSFF EILQQGAVKK SKCSSISSDH 120 NDEPVVVEPE LVSLSLGRTT PMESVKDEKT TSSIKSKDDP EIKAGLTLGL DSKFQLSSPQ 180 KSSEDQVKED DGAAETWPPN KIQKTTSRNG DEDQQNHVKR ARVSVRARCD APTMNDGCQW 240 RKYGQKISKG NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILITTYEGNH NHPLPVSATA 300 MASTTSAAAS MMLSGSSTSQ PGLNGLNFSH HDNSTTRQFY LPNSTSSSLS PTITLDLTSS 360 PSPSSSCNYF NSFPTSFPRF PPTSLNFSSS ESNILPAVWG NGYPGYGAVP YYQTQPGNSI 420 LGNESQNQIY QSLPGNNQQG GASQQSLTET LTKVITSDPS FRSVIAAAIS SMVCNGAKSG 480 DQTDQKAQHF GQKLMQAMVS QNEKGQSSCS SSYFNGLASS SSQTGGSLLQ SSLPFSILNS 540 AFKPASDDKE LKN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 221 | 295 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.3303 | 0.0 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 73861314 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016751454.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 isoform X1 | ||||
Swissprot | Q9LXG8 | 1e-119 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | A0A1U8PMK6 | 0.0 | A0A1U8PMK6_GOSHI; probable WRKY transcription factor 72 isoform X1 | ||||
STRING | Gorai.012G056800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 9e-75 | WRKY DNA-binding protein 72 |