PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A05G2938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22849.1 Da PI: 10.2021 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106 | 1.9e-33 | 112 | 170 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ Gh_A05G2938 112 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDQTIVVTTYEGIHTHP 170 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-35 | 97 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-30 | 104 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.01 | 107 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.9E-40 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-27 | 113 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MENKYQMFFP ISSPASSAAY DPLTTNIMAP TNPHVFNNFH GNSPNGLMDL KTDQKFIKKA 60 AEVKEPVDQN GRFVGSKTDY HLKSSAATDK KKEKMIRKPR YAFQTRSEVD ILDDGYRWRK 120 YGQKAVKNNK FPRSYYRCTH QGCNVKKQVQ RLSKDQTIVV TTYEGIHTHP IHNPTDKFEH 180 ILSQMHVYTP LFKPIHL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-28 | 102 | 171 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 6e-28 | 102 | 171 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23261 | 3e-52 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF669846 | 0.0 | KF669846.1 Gossypium hirsutum WRKY transcription factor 99 (WRKY99) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752853.1 | 1e-148 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | A0A1U8PR88 | 1e-147 | A0A1U8PR88_GOSHI; probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2P5VTF7 | 1e-147 | A0A2P5VTF7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G085100.1 | 1e-141 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13080.1 | 5e-54 | WRKY DNA-binding protein 75 |