PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G2888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28059.5 Da PI: 6.7712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.6e-10 | 44 | 72 | 3 | 31 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 ++h+++E+rRRdriN ++ Lrel+P + Gh_A05G2888 44 TSHSQAEKRRRDRINAQLSALRELIPMSH 72 68************************962 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.804 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-8 | 42 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-8 | 44 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-5 | 44 | 75 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 44 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00589 | 118 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MENYYKSSSR TDFSDKVSND SSFIVPWTIP VEEIAEDKAT TVYTSHSQAE KRRRDRINAQ 60 LSALRELIPM SHKKSAKAFN IPTEMDEVTV DWDRPQDINP NGTRQGNDSK DKIFIRASVC 120 CDDRPEVFTE LIKILKGLRL NTIKADISSV GGRMKCNFIL CYNSIDEEEE EGEGVSPTTL 180 KQSLDVVLSR IASSSDVSDC RIRSKRQSFT LEYLIQSIAT RSYPRKDSSF SKNLIGEHSL 240 TNRGTVTN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616445 | 0.0 | JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614715.1 | 1e-135 | PREDICTED: transcription factor bHLH51-like | ||||
TrEMBL | A0A2P5WLC4 | 1e-144 | A0A2P5WLC4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G078100.1 | 3e-84 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-34 | bHLH family protein |