PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2690

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 869aa MW: 96280.5 Da PI: 5.4693

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2690	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180.1	2.6e-56	14	128	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 e ++rwlk+ e++ iL+n+ek++l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+yw Gh_A05G2690 14 EaQSRWLKPAEVLFILQNHEKYQLEQEPPHKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEQNPSFQRRSYW 111 5599******************************************************************************************** PP CG-1 101 lLeeelekivlvhylev 117 +L+ ++e+ivlvhy+e Gh_A05G2690 112 MLDPAYEHIVLVHYREI 128 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.253	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.8E-76	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.1E-48	14	127	IPR005559	CG-1 DNA-binding domain
CDD	cd00102	2.23E-6	422	506	No hit	No description
SuperFamily	SSF81296	4.76E-18	422	506	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	1.2E-8	422	503	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.1E-9	422	505	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	8.1E-16	615	714	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.112	619	712	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.86E-16	622	714	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.49E-14	624	712	No hit	No description
Pfam	PF12796	1.3E-8	625	713	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.22	652	685	IPR002110	Ankyrin repeat
SMART	SM00015	26	770	792	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.565	771	800	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.9	828	850	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	829	858	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.022	831	849	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MAQSGYDINN LFREAQSRWL KPAEVLFILQ NHEKYQLEQE PPHKPTSGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE QNPSFQRRSY WMLDPAYEHI 120 VLVHYREINE AKPCSASTVH SPLSNSASTP SPISYTSQNP GFNSLSSDVH ESYQNLPSPG 180 SAEVSSDIVI KNNGIDNTVE YPSPDDLQVV QALKRLEEQL SLNEDSVKEM SQFYGMDGDT 240 NDSEFQEYGR EITKQEQQAD LLYEPDNIFQ DDLYSQPARV ENYSNSSMLL PDGGKNGGHS 300 QVYGNDNSDG IHESQYWKSV FDSCKTQSAV NSKGKPLSSL RMRAAEQQEQ SHLLNFNGSS 360 IEASPVLLHQ EVGNVDIPAY SSAIESFDTK SDNYRMFFNQ EEIGIPLAAD SSLTIAQKQK 420 FTIREISPEW GYSSEPTRVF IVGSFLCDPS ESAWACMFGE TEVPIEIIQE GVICCKAPPH 480 LPGKVTLCIT SANRESCSEI REFEYRVSSS SCTRCNVSHA EAPKSLEELL LLVRFVKMLL 540 TDSSSQKDSI DSGENFSEKL KADDESWSHV IEALLIGSGT SSGTIDWLLQ ELLKDKLQQW 600 LSSRSKESGD QPGITMSKKE QGIIHMAAGL GFEWALNPIL NHGVSINFRD INGWTALHWA 660 ARFGSREKMV AALIASGASA GAVTDPTSQD PSGETPASIA ASSGHKGLAG YLSEVALMSH 720 LSSLTLEESE LSKGSAAVQA EIAVNSVSRG SLATNEDQLS LKDTLAAVRN AAQAAARIQN 780 AFRAHSFRKR QQKEDANIAA SVDEYGISLG EIQNLSTMSK LAFGNARDYN SAALSIQKKF 840 RGWKGRKDFL ALRQKVVKIQ VSLLFIRIY

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MAQSGYDINN LFREAQSRWL KPAEVLFILQ NHEKYQLEQE PPHKPTSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYREINE AKPCSASTVH SPLSNSASTP SPISYTSQNP GFNSLSSDVH ESYQNLPSPG  180
SAEVSSDIVI KNNGIDNTVE YPSPDDLQVV QALKRLEEQL SLNEDSVKEM SQFYGMDGDT  240
NDSEFQEYGR EITKQEQQAD LLYEPDNIFQ DDLYSQPARV ENYSNSSMLL PDGGKNGGHS  300
QVYGNDNSDG IHESQYWKSV FDSCKTQSAV NSKGKPLSSL RMRAAEQQEQ SHLLNFNGSS  360
IEASPVLLHQ EVGNVDIPAY SSAIESFDTK SDNYRMFFNQ EEIGIPLAAD SSLTIAQKQK  420
FTIREISPEW GYSSEPTRVF IVGSFLCDPS ESAWACMFGE TEVPIEIIQE GVICCKAPPH  480
LPGKVTLCIT SANRESCSEI REFEYRVSSS SCTRCNVSHA EAPKSLEELL LLVRFVKMLL  540
TDSSSQKDSI DSGENFSEKL KADDESWSHV IEALLIGSGT SSGTIDWLLQ ELLKDKLQQW  600
LSSRSKESGD QPGITMSKKE QGIIHMAAGL GFEWALNPIL NHGVSINFRD INGWTALHWA  660
ARFGSREKMV AALIASGASA GAVTDPTSQD PSGETPASIA ASSGHKGLAG YLSEVALMSH  720
LSSLTLEESE LSKGSAAVQA EIAVNSVSRG SLATNEDQLS LKDTLAAVRN AAQAAARIQN  780
AFRAHSFRKR QQKEDANIAA SVDEYGISLG EIQNLSTMSK LAFGNARDYN SAALSIQKKF  840
RGWKGRKDFL ALRQKVVKIQ VSLLFIRIY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3707	1e-149	embryo\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606460.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0B0N9I2	0.0	A0A0B0N9I2_GOSAR; Calmodulin-binding transcription activator 4-like protein
STRING	Gorai.009G332200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]