PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2652

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 328aa MW: 36389.2 Da PI: 6.1851

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2652	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.5	1.6e-15	54	103	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P+ ++K + a+ L +++eY+++Lq Gh_A05G2652 54 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 103 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.2E-18	50	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-23	50	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.999	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-13	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.87E-14	54	107	No hit	No description
SMART	SM00353	1.3E-11	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRTGKQSQEE EEYEDEEFGS KKQGSSSNQI MSGNAINNSN KAGGKNSDKA NAIRSKHSVT 60 EQRRRSKINE RFQVLRDIIP NTDQKRDTAS FLLEVIEYVQ YLQEKVKKYE GSYQEWNSEP 120 AKLMPWRNSH WRVQSFVGQQ QAVKNGSDPG SAFAGKFNEN NININPTVIA SAQNPVESDP 180 VRDTMSKAMD QQPELGSRGM PLPIQGDNML VHPLQRPVSE AQPTECFIGN DTVNQQEDLT 240 IEGGTINISS VYSEGLLNSL TQALQSAGLD LSQANIAVQI DLGKHANRGL TSGTSAKDPQ 300 SAPFQAMTHH RDVSNGEESD HAQKRMKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9019	0.0	boll\| embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748145.1	0.0	PREDICTED: transcription factor BIM2-like
Refseq	XP_017603187.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-113	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D2TYR8	0.0	A0A0D2TYR8_GOSRA; Uncharacterized protein
STRING	Gorai.009G327300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-110	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]