PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2399

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 228aa MW: 24800.5 Da PI: 8.5579

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2399	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.6e-42	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ Gh_A05G2399 49 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVR 146 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Gh_A05G2399 147 AE 148 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.813	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-42	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MPECPEKGKK ERFDEIGKKI KREADVSANY QMGRRHMLGP PGTLNTITPC AACKLLRRRC 60 AQECPFSPYF SPHEPQKFAS VHKVFGASNV SKMLMEVPES QRADAANSLV YEANVRLRDP 120 VYGCMGAISA LQQQVQSLQA ELNAVRAEII KYKCREANLV PPSSHVAMLS SGAVPVAAPP 180 PATTQPPPPP PPPPLPTITA VTTCSIYTQP TTSTDYTTLS NDNVSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	41	161	3	123	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	41	161	3	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448054.1	1e-137	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-84	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A0D2SA42	1e-165	A0A0D2SA42_GOSRA; Uncharacterized protein
STRING	Gorai.009G295000.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-83	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]