PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2350
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 459aa    MW: 52336.8 Da    PI: 6.8946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2350genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.54.6e-96764571374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl  A+ v++++ + a   L++l + +s  gd++qR++ayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ ++ vsP+++f+h+ta
  Gh_A05G2350  76 LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTCLYRVSPYYQFAHFTA 169
                  689****************************************************999***999888886....78889999**************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaI ea e+e     +++H+iDfd+ +G+QWp+L+q+L++++  ++  slR+Tg+g     s  el+et++rL +fA+ + ++ fef+ l    l  
  Gh_A05G2350 170 NQAIIEAYEKEeeinnRALHVIDFDVAYGFQWPSLIQSLSEKAsgGNRISLRLTGFGT----SFAELQETENRLVSFAKGFrNLVFEFQGL----LRG 259
                  **********955554555***********************9634455*********....9****************9758*******8....777 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr k++E++aVnlv++l +l  +s+++++    +Lk v+s +P +vv+veqe  ++  sFl rf+e+l+y++a+fdsl+  lp es er ++E
  Gh_A05G2350 260 SKLTNLRKKKNETVAVNLVFHLTTLN-NSMKISD----TLKSVRSHRPSIVVLVEQEGGRSPRSFLSRFMESLHYFAAMFDSLDDCLPVESAERLSIE 352
                  7889*****************99996.6666666....************************************************************ PP

         GRAS 287 rellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk...sdgyrveee.sgslv.lgWkdrpL 367
                  +  lg+ei++++ c ++e    +  r e++e+W++r+e+ GF+  +ls+k   qaklll+        +++   + g+rv e+ ++ ++ lgW+dr L
  Gh_A05G2350 353 KNHLGKEIKSMINCDKDEennkSSSRYEKMETWKNRMESHGFEGTKLSSKCLIQAKLLLKitthycplQCEgevNGGFRVFERdEAKAIsLGWQDRCL 450
                  **************887633336789********************************98333222221221222348877653333446******** PP

         GRAS 368 vsvSaWr 374
                  +++SaW+
  Gh_A05G2350 451 LTASAWQ 457
                  ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.87450424IPR005202Transcription factor GRAS
PfamPF035141.6E-9376457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEDDAYEEEP LNLSLTIMAD PSGEKINRKR KRRVPLPSSY EGCEGKIFKL LQVREEMLKL  60
DHKRKGVVED GKALHLIHLL LITATSVDEN NVNSALDNLT QLYQSVSLMG DSVQRVVAYF  120
ADGLVARLLT RKSPFYDMIM KEPTAEEEFL AFTCLYRVSP YYQFAHFTAN QAIIEAYEKE  180
EEINNRALHV IDFDVAYGFQ WPSLIQSLSE KASGGNRISL RLTGFGTSFA ELQETENRLV  240
SFAKGFRNLV FEFQGLLRGS KLTNLRKKKN ETVAVNLVFH LTTLNNSMKI SDTLKSVRSH  300
RPSIVVLVEQ EGGRSPRSFL SRFMESLHYF AAMFDSLDDC LPVESAERLS IEKNHLGKEI  360
KSMINCDKDE ENNKSSSRYE KMETWKNRME SHGFEGTKLS SKCLIQAKLL LKITTHYCPL  420
QCEGEVNGGF RVFERDEAKA ISLGWQDRCL LTASAWQCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-568445627378Protein SCARECROW
5b3h_A7e-568445626377Protein SCARECROW
5b3h_D7e-568445626377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RKRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752903.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A1U8PRE10.0A0A1U8PRE1_GOSHI; scarecrow-like protein 21
STRINGGorai.009G289600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15761916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.17e-54SCARECROW-like 21