PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2273

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 356aa MW: 38854.2 Da PI: 4.7329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2273	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	305	344	10	54
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r R d+i++ + L++l+P a +K + + +L +A++Y+ksL Gh_A05G2273 305 RMRIDKIRETVSVLQSLIPGvA-----GK-DAIVVLDEAIDYLKSL 344 99****************66.....44.4599********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.175	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-5	305	349	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-6	305	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-7	305	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGEGRGSWFP LAWQSHNMNL LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH 60 LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF 120 LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF 180 DDNETNVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV 240 ASSSGLTKKR KLLDGSNDYT PLLMDNTSSL NHCRCSEQED DADSCFANGQ NLRSDGMHLS 300 SGNKRMRIDK IRETVSVLQS LIPGVAGKDA IVVLDEAIDY LKSLKRKAET LGLSTP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGEGRGSWFP LAWQSHNMNL LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH  60
LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF  120
LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF  180
DDNETNVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV  240
ASSSGLTKKR KLLDGSNDYT PLLMDNTSSL NHCRCSEQED DADSCFANGQ NLRSDGMHLS  300
SGNKRMRIDK IRETVSVLQS LIPGVAGKDA IVVLDEAIDY LKSLKRKAET LGLSTP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25149	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608352.1	0.0	PREDICTED: transcription factor bHLH145-like
TrEMBL	A0A0B0MG30	0.0	A0A0B0MG30_GOSAR; Transcription factor protein
TrEMBL	A0A2P5Y2X2	0.0	A0A2P5Y2X2_GOSBA; Uncharacterized protein
STRING	Gorai.009G279600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10530	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-07	phytochrome interacting factor 3