PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G2267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 282aa MW: 30670 Da PI: 7.5304 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.3 | 1.6e-16 | 205 | 241 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gh_A05G2267 205 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 241 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 5.9E-8 | 75 | 110 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.48 | 75 | 110 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-9 | 79 | 109 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.471 | 141 | 183 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-16 | 141 | 183 | IPR010402 | CCT domain |
SMART | SM00401 | 6.4E-15 | 199 | 252 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.462 | 199 | 260 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-12 | 203 | 252 | No hit | No description |
CDD | cd00202 | 2.93E-14 | 204 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-15 | 204 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.0E-14 | 205 | 241 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 205 | 232 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MYGQSQPMNV PAPVISSGVD VRDDVSASAS VDNHQNVSYD AHPLDNGVGV EGVHTDPIYA 60 TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELNSGPHGV 120 EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF 180 TSSKKSDRTD SCSTQDNDNL PDNSCTHCGI SSNSTPMMRR GPSGPRSLCN ACGLFWANKG 240 TLRDIPKKTR DHSVPPVEHR DSEANDSDSG TAIPTQSNIV SV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016748557.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 7e-73 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A1U8PBJ0 | 0.0 | A0A1U8PBJ0_GOSHI; GATA transcription factor 25-like | ||||
STRING | Gorai.009G279200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 7e-75 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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