PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2237
Common NameWRKY78
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 354aa    MW: 38705.9 Da    PI: 10.2469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2237genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30282339359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+ ++p ++++tYe +Hnh+
  Gh_A05G2237 282 DEYSWRKYGQKPIKGSPHPRGYYRCSSVkGCPARKHVERALDEPMMLIVTYEADHNHS 339
                  9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-15233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-32268339IPR003657WRKY domain
PROSITE profilePS5081129.792275341IPR003657WRKY domain
SuperFamilySSF1182907.98E-26276340IPR003657WRKY domain
SMARTSM007741.6E-35280340IPR003657WRKY domain
PfamPF031066.8E-26282338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTVELKMVYG GDGGGSFARK VAETALKEAA NSGIQGVEEL ITLMSKNQEL FNPDVSIKTA  60
APSGSAESAM DIQAVTDKTV NSFKEVISLL DRPRIGHARF RRAPVLHPNQ DTEQASKKIQ  120
EPETASSSFQ VTKDQVSAFK PFCLTPSYRL PPLPHSRPQS KRSPPLIAKI GVLERNESPS  180
TINFSSSRTL SAGNSFISSS TGNTDSFQPS GFQFTSPSHV PSSGKPPLFS SLKRKCNSLD  240
GAALKYGSFS RRCHCSKKRK SKLKKVIRVP AISNKTADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYRCSSVK GCPARKHVER ALDEPMMLIV TYEADHNHSH NSTDVSPALI LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19268338271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.119330.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698010.0KF669801.1 Gossypium hirsutum WRKY transcription factor 78 (WRKY78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314588.10.0probable WRKY transcription factor 7
RefseqXP_017605093.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-102WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U8PBK00.0A0A1U8PBK0_GOSHI; probable WRKY transcription factor 7
STRINGGorai.009G276100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-92WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]