PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G2207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9828.74 Da PI: 6.5263 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + + +W ++a+ +g +t+++++ ++ Gh_A05G2207 15 YWTPKQNKLFEKALAVYDRDtpdRWQKVAAAVG-DKTPEEVRRHY 58 5*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.321 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.93E-13 | 16 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-7 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MSSSSRTSSR DSNSYWTPKQ NKLFEKALAV YDRDTPDRWQ KVAAAVGDKT PEEVRRHYEI 60 LVTDVNHIES GQIPIPDYES TGNNSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-31 | 8 | 86 | 3 | 81 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expressed at stage two (plastochrons 7 and 8), when the floral meristem comprised a loaf-shaped bulge of cells. Expression was in the dorsal region of the floral meristem. At stage four, when sepal primordia had emerged around the meristem dome, expression could be seen in the dorsal sepal primordium. At stage five, expressed in emerging dorsal primordia of whorls two and three. In older flower buds (stages seven and eight), expression was found mainly in the dorsal petals and staminode. {ECO:0000269|PubMed:15790677}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the dorsal region of developing flowers. {ECO:0000269|PubMed:15790677}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752915.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_017603411.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 2e-31 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1U8PP13 | 3e-57 | A0A1U8PP13_GOSHI; protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5W7V0 | 3e-57 | A0A2P5W7V0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G273000.1 | 1e-57 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-31 | RAD-like 6 |
Publications ? help Back to Top | |||
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