PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2194
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 24312.4 Da    PI: 5.3626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2194genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-193786255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r  r +lg+f+ta eAa  ++aa++kl+g
  Gh_A05G2194 37 TYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTALEAAMTYDAAARKLYG 86
                 69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-303696No hitNo description
PfamPF008477.2E-133786IPR001471AP2/ERF domain
SMARTSM003804.9E-3537100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-303795IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-203795IPR016177DNA-binding domain
PROSITE profilePS5103222.013794IPR001471AP2/ERF domain
PRINTSPR003672.6E-93849IPR001471AP2/ERF domain
PRINTSPR003672.6E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGGPGSGEKK QVKRRAQASS RKGCMRGKGG PENALCTYKG VRQRTWGKWV AEIREPNRGS  60
RLWLGTFDTA LEAAMTYDAA ARKLYGSDAK LNLPHLCVNS RFPPPPNTQV APRGNQPLNP  120
TTSSSNSPII IRIDEVTPVS NSESDMSQGN MVENNAKFGQ NQEEIGGFWE NMTMNLPVLD  180
DSIWAEAVMS LDFPVMDDPS IFDTSLVDTT GWDALQTPWC M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-173894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-1738100668ATERF1
3gcc_A7e-1738100668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748623.11e-165PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-55DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U8PEC91e-163A0A1U8PEC9_GOSHI; dehydration-responsive element-binding protein 2D-like
STRINGGorai.009G271400.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]