PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1942

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 340aa MW: 37711.3 Da PI: 6.5052

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1942	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++k++G g+W++ +r g++R++k+c++rw +yl Gh_A05G1942 14 KGPWTPEEDQKLVHYIKRHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Gh_A05G1942 67 RGKFSQDEEQTILHLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.6	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-12	16	61	No hit	No description
PROSITE profile	PS51294	26.571	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGRSACCDEN GLKKGPWTPE EDQKLVHYIK RHGHGSWRAL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQDEEQTILH LHSVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHQPRT DIFASLPQLI ALANLKELLE NSPHLFDDQA LILQAEAAHL AKLQYMQLLL 180 HSAASTTTND DSLSSPNGIA DMEALNLLSS PVPAHVKENQ VIPNSSQFSV GNASSQQLHH 240 PTLLPHLLDP QVPFSFQTSL NNENTEMGNC SSFTMLSQGD NQTDNSSSWL LPSPTIPPTA 300 TETSLSNPGD VSSNSSNNNG AASPYWPELY FDDSIMHEIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748813.1	0.0	PREDICTED: transcription factor MYB86-like
Swissprot	Q9S9Z2	1e-128	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1U8PEX4	0.0	A0A1U8PEX4_GOSHI; transcription factor MYB86-like
STRING	Gorai.009G236900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-123	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]