PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37331 Da PI: 6.1836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 2e-12 | 137 | 188 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P + + ++ + a+i A++++k+L+ Gh_A05G1905 137 QRMTHIAVERNRRKQMNEYLAAIRSLMPAS---YVQRGDQASIIGGAINFVKELE 188 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-13 | 135 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-12 | 135 | 192 | No hit | No description |
PROSITE profile | PS50888 | 14.678 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-16 | 136 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-9 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MALEAVVYPP DRFTYGFKDI FPVAGGGGGA WGYDFCFQDE DKVLPVILET NLQQQGSHAN 60 WDSSSTSVMQ QQHAKELWDP YSSSPETCTV DQSLPGPAAG FQAPMEPPPA YTATNGGGRR 120 KRRRTRSSKN KEELENQRMT HIAVERNRRK QMNEYLAAIR SLMPASYVQR GDQASIIGGA 180 INFVKELEQL LQTMEAHKRT TQHPEHNGDP SPFAEFFAFP QFSTRATSHC NNSPSSMAAD 240 QPMATESVAD IEVTMVETHA NLKILSKKRP RQLLKLVAGI QSLSLTILHL NVSTVDEMAL 300 YSISVKVEEG CHLNTVDEIA AAVNQMLRSI QEEAAFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 123 | RKRRR |
2 | 119 | 124 | RKRRRT |
3 | 137 | 148 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13254 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017621080.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 1e-96 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0B0NBR4 | 0.0 | A0A0B0NBR4_GOSAR; Transcription factor bHLH96-like protein | ||||
TrEMBL | A0A2P5Y7Q1 | 0.0 | A0A2P5Y7Q1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G233000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-95 | bHLH family protein |
Publications ? help Back to Top | |||
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