PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1878
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 230aa    MW: 25550.9 Da    PI: 9.1995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1878genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-153885254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +++h+e+ErrRR+riN  f++Lr+llP+      +K +Ka+ L ++v+++++L
  Gh_A05G1878 38 CKSHKEAERRRRQRINAHFSTLRSLLPNT-----TKTDKASLLAEVVHHVREL 85
                 789*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-143490No hitNo description
PROSITE profilePS5088816.4253685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-123885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-153994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-153990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-154291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.81E-7133199No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-8134197No hitNo description
CDDcd048731.46E-5136197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MFPVKSFSGV ENNNSPVMLM EGDDSFKDLS ERKSTEACKS HKEAERRRRQ RINAHFSTLR  60
SLLPNTTKTD KASLLAEVVH HVRELKRQVE DVGRRGRDGC CSNSRPELDT SWPFPGECDE  120
ATLSFCNEGG KLLKATICCE DRPGLNHDLS RVIRLVQAKV VRAEMTTVGG RTKSVVVMQW  180
SGDEEQVGPL KRALKDVVEN RVSRLAQGPG SKRARVFGSN SETGHGFLVG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219180.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098840450.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748890.11e-168PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1U8PCN11e-167A0A1U8PCN1_GOSHI; transcription factor bHLH30-like
STRINGGorai.009G230000.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1885867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-34basic helix-loop-helix 32