PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 358aa MW: 39345.6 Da PI: 10.0873 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.1e-31 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh+ Gh_A05G1774 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAMDDPMMLIVTYEGDHNHS 344 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.4E-17 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-33 | 273 | 345 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.481 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-26 | 283 | 345 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-37 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-27 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAVELMMGYD GGNSFVRKIE ETALNEAKTA GIQGVEELIR LMSKSQQLYN QDASSKTSSP 60 SGSEPAMELQ AITDKTVKSF KKVISLLGQP RTGHARFRRA PLSHLEQEVK HQQQDARQPR 120 QKIPESGDSS LQVAKNQVSA FKPFCSSLGH RLPPLPHNHH QSKSSSLLVP KTGLLERNET 180 ASAINFSSSP PLSDGNSFMS SLTGDTDSMH PSLSSGFQFT SPFHIPCSGK PQFSSSLKRK 240 CNSKDDAALK CGSSSSRCHC SKKRKSRVKR VVRVPAISSK MADIPPDDYS WRKYGQKPIK 300 GSPHPRGYYK CSSVRGCPAR KHVERAMDDP MMLIVTYEGD HNHSHISDSP APLVLESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 273 | 343 | 2 | 71 | WRKY transcription factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13134 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031081 | 0.0 | KF031081.1 Gossypium hirsutum WRKY transcription factor 32 (WRKY32) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749320.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-107 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A1U8PDU3 | 0.0 | A0A1U8PDU3_GOSHI; probable WRKY transcription factor 7 | ||||
TrEMBL | A0A2P5WDF1 | 0.0 | A0A2P5WDF1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G214800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 7e-91 | WRKY DNA-binding protein 7 |