PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1769 | ||||||||
Common Name | DREB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 17284.5 Da PI: 10.1038 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Gh_A05G1769 29 PFRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 78 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.707 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-35 | 29 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-26 | 30 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.0E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 30 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MELGDCCLTS SPASGEKRKL HRTQQKEKPF RGIRMRKWGK WVAEIREPNK RSRIWLGSYT 60 TPVAAARAYD TAVFYLRGPS ARLNFPDLIF QEDELRDISA ASIRKKATEV GAKVDALQTS 120 LHHASASSSE SSNPTRVFRK PDLNKYPDSS DED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 26 | 86 | 2 | 63 | ATERF1 |
3gcc_A | 3e-15 | 26 | 86 | 2 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8113 | 0.0 | boll| ovule| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY174160 | 0.0 | AY174160.1 Gossypium hirsutum DRE binding protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687772.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Refseq | XP_017603753.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 2e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2P5WDF7 | 1e-110 | A0A2P5WDF7_GOSBA; Uncharacterized protein | ||||
TrEMBL | Q7XAV5 | 1e-110 | Q7XAV5_GOSHI; DRE binding protein 1 | ||||
STRING | Gorai.009G214300.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 8e-51 | related to AP2 1 |
Publications ? help Back to Top | |||
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