PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9612.87 Da PI: 8.9129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.8e-08 | 3 | 42 | 10 | 47 |
HHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +l+ +a + ++ +W+ ar +g g+t +++k+++q++ Gh_A05G1658 3 KLFENALVIYDKDtpdRWHNLARAVG-GKTVEEVKLHYQNL 42 6889999999998999**********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.391 | 1 | 47 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.64E-9 | 2 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-5 | 3 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
QNKLFENALV IYDKDTPDRW HNLARAVGGK TVEEVKLHYQ NLVEDIQQIE SGQVPLPPYK 60 KAGGNKGYNF MDGEQRMRNL RLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-29 | 1 | 83 | 15 | 93 | RADIALIS |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448275.1 | 4e-56 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 3e-30 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 2e-30 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0D2QJM4 | 1e-54 | A0A0D2QJM4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G201700.1 | 2e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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