PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1595

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 425aa MW: 46205.5 Da PI: 9.5767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1595	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	180	201	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Gh_A05G1595 180 CSQCGEVFPKIESLELHQAVrH 201 ******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	178	206	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	180	201	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.66E-24	203	422	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.5E-14	205	422	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MALLTFLPEP AAEPMKVEQP SKRGRRNPVK KQKEKQPSSW DQIKNLLSCK QIEGSKVHDP 60 SKNNQLPHHH GYSKLGSSCK SICSFKDVVH GNTRVVHRAD NSPESSTVGQ ETGLLRRKAA 120 NSSSTRSLSG STRSNNSSTT YTTSSSSRAM QFRKLSGCYE CRMIVDPSRY PSSRTTISAC 180 SQCGEVFPKI ESLELHQAVR HAVSELGPDD SGRNIVEIIF KSSWLKKDSP ICKIERILKV 240 HNTQRTIQRF EDCRDAVKTL ALNSTRKNAR CAADGNELLR FHCTTLSCSL GARGSSSLCG 300 SIPGCGVCTI IKQGFQKKGG GVAAAAEFKG VCTTASSGRA HDSLKCTDGR RAMLVCRVIA 360 GRVKRVSEDA PPFEEDNSGG VAAATGLYDS LAAYAGVYSN LEELVVFNPR AILPCFVVIY 420 KAHES

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MALLTFLPEP AAEPMKVEQP SKRGRRNPVK KQKEKQPSSW DQIKNLLSCK QIEGSKVHDP  60
SKNNQLPHHH GYSKLGSSCK SICSFKDVVH GNTRVVHRAD NSPESSTVGQ ETGLLRRKAA  120
NSSSTRSLSG STRSNNSSTT YTTSSSSRAM QFRKLSGCYE CRMIVDPSRY PSSRTTISAC  180
SQCGEVFPKI ESLELHQAVR HAVSELGPDD SGRNIVEIIF KSSWLKKDSP ICKIERILKV  240
HNTQRTIQRF EDCRDAVKTL ALNSTRKNAR CAADGNELLR FHCTTLSCSL GARGSSSLCG  300
SIPGCGVCTI IKQGFQKKGG GVAAAAEFKG VCTTASSGRA HDSLKCTDGR RAMLVCRVIA  360
GRVKRVSEDA PPFEEDNSGG VAAATGLYDS LAAYAGVYSN LEELVVFNPR AILPCFVVIY  420
KAHES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8315	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749411.1	0.0	PREDICTED: uncharacterized protein LOC107958228
TrEMBL	A0A1U8PDY8	0.0	A0A1U8PDY8_GOSHI; uncharacterized protein LOC107958228
TrEMBL	A0A2P5XYB4	0.0	A0A2P5XYB4_GOSBA; Uncharacterized protein
STRING	Gorai.009G195000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein