PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1538

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 928aa MW: 103320 Da PI: 6.8398

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1538	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CRq+GIkRWP+Rk++++ Gh_A05G1538 603 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRQHGIKRWPSRKLHKV 654 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.7	593	674	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	606	654	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.04E-22	829	917	No hit	No description
PROSITE profile	PS51745	26.156	831	914	IPR000270	PB1 domain
SMART	SM00666	2.2E-24	831	914	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.0E-21	831	911	No hit	No description
Pfam	PF00564	5.3E-18	832	913	IPR000270	PB1 domain
CDD	cd06407	7.63E-41	833	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MEDSILSPVM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPT LDSNGGDLGG 60 SLFQGENQIS FLPGYPHMNE NHSQGAHLSP NLDDVDGMSR NLHGDCMTNT SELSRRWWIG 120 PRTNPGPSTS VMLRLIGALN HIKDSEKETD VLVQLWLPVN KGGRRILTTS EQPFLLDPNS 180 QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH 240 GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTGNI 300 QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD 360 ACYIAEPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF 420 KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGQKEML NSLSIILQQV CCSLRVVTNE 480 ELEEDRDMAV SEVIASLDGT PSRKELSEDQ CTYHSEKYSR ESSSWTVSLT EVNQSSSTST 540 STAMKLRKGK PRATWDEKLS KVKQHKKQIS LRGSVEGGDS TINEISFSSA TRRKTGQKRR 600 SKAEKTITLQ VLRQYFSESL KDAAKSLGVC PTTLKRTCRQ HGIKRWPSRK LHKVGNSLEK 660 LQHVIDSVQG VSGAFHISSL YPKFPELASP RPSGKSTSSA SVLGLNDKPK QKPILPEGGN 720 FVSQAATSNS PSSSCSQSSS SSHSCSSGTH QPSKFNISGN GGVIIGENSG NGELKRVTND 780 TELHTLSQEG LKLFPRSQSP ASVKEQLISD SIQPVITENN SQVAQDLDAQ TQKVKVTYGD 840 EKIRFRMQSK WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVCR 900 WCEGNTIRLL LQASHHHLDR SSGSTCPS

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MEDSILSPVM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPT LDSNGGDLGG  60
SLFQGENQIS FLPGYPHMNE NHSQGAHLSP NLDDVDGMSR NLHGDCMTNT SELSRRWWIG  120
PRTNPGPSTS VMLRLIGALN HIKDSEKETD VLVQLWLPVN KGGRRILTTS EQPFLLDPNS  180
QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH  240
GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTGNI  300
QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD  360
ACYIAEPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF  420
KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGQKEML NSLSIILQQV CCSLRVVTNE  480
ELEEDRDMAV SEVIASLDGT PSRKELSEDQ CTYHSEKYSR ESSSWTVSLT EVNQSSSTST  540
STAMKLRKGK PRATWDEKLS KVKQHKKQIS LRGSVEGGDS TINEISFSSA TRRKTGQKRR  600
SKAEKTITLQ VLRQYFSESL KDAAKSLGVC PTTLKRTCRQ HGIKRWPSRK LHKVGNSLEK  660
LQHVIDSVQG VSGAFHISSL YPKFPELASP RPSGKSTSSA SVLGLNDKPK QKPILPEGGN  720
FVSQAATSNS PSSSCSQSSS SSHSCSSGTH QPSKFNISGN GGVIIGENSG NGELKRVTND  780
TELHTLSQEG LKLFPRSQSP ASVKEQLISD SIQPVITENN SQVAQDLDAQ TQKVKVTYGD  840
EKIRFRMQSK WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVCR  900
WCEGNTIRLL LQASHHHLDR SSGSTCPS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21699	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688002.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_016688003.1	0.0	PREDICTED: protein NLP4-like
TrEMBL	A0A1U8JH70	0.0	A0A1U8JH70_GOSHI; protein NLP4-like
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein