PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 354aa MW: 40012.9 Da PI: 6.4129 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 260 | 316 | 2 | 55 |
T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 rkR ++ ke + L + + k +yps++++ LA+++gL+++q+ +WF N+R ++ Gh_A05G1484 260 RKRGKLPKEARQKLLDWWAkhyKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 316 5555556666666655555222579*****************************885 PP | |||||||
2 | ELK | 41.2 | 3.6e-14 | 236 | 257 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Gh_A05G1484 236 ELKGQLLRKYSGYLGSLKQEFM 257 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-19 | 99 | 143 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-21 | 101 | 139 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-18 | 148 | 199 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.1E-16 | 151 | 198 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 236 | 256 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.8E-11 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.41 | 256 | 319 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-20 | 258 | 329 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-14 | 258 | 323 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-16 | 259 | 320 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 261 | 321 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.1E-17 | 276 | 315 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 294 | 317 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AFHPHDQHQY HHHHNSDFNS LFLPLAPTNN 60 QDQNHNSSSG SSMIIDDQSN TTNNNTGCYF MESNDGSSSS VKAKIMAHPH YHRLVAAYVN 120 CQKVGAPPEV VARLEQVCAS AATMGPSTTG CIGEDPALDE FMEAYSEMLA KYEQELSKTF 180 KDAMLFLQSV EYQFKELTVS PSNSACGDAV NLNGSSEEEA DMSNHHFIDP LAEDRELKGQ 240 LLRKYSGYLG SLKQEFMKKR KRGKLPKEAR QKLLDWWAKH YKWPYPSESQ KLALAESTGL 300 DQKQINNWFI NQRKRHWKPS EDMQFVVMEA TYPHYFMDNI LGNPFPMDLS HALL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 260 | LKQEFMKKRK |
2 | 257 | 264 | KKRKRGKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749503.1 | 0.0 | PREDICTED: homeobox protein SBH1-like | ||||
Swissprot | P46608 | 1e-147 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A1U8PGR1 | 0.0 | A0A1U8PGR1_GOSHI; homeobox protein SBH1-like | ||||
STRING | Gorai.009G181500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6473 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-132 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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