PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 405aa MW: 44765.3 Da PI: 8.6827 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 170 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++Cg+ F+ + ++H + H Gh_A05G1425 170 YVCQKCGENFKKLEAIESHHLStH 193 9******************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.702 | 170 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 193 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.3E-16 | 195 | 402 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.5E-8 | 222 | 375 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MSSAWLTSLK RSVNCKPKLP DVKEPAANDS TEKNSPCLCS SGCSRSLSNL RDVIHGSKRQ 60 ADKAPRIGSP TSIASSEIIN QITHQAVFTD SKCVLEIKTE CSGNDDGKGG STFVGTLRPG 120 TPGPGDRFME PAYNSRRSRK IIAGPSLMRS SCGISSSKPR RSLDFESQRY VCQKCGENFK 180 KLEAIESHHL STHAVTALSE GDSSKKIVEL ICQTSFLEPE NKFGEIERIL KIHNMQRTLV 240 QFEDYREMVK LKANKLSKKH PRCLADGNEL LRFYGSTVAC SLGMENTSSL CTLEQCEVCQ 300 ILRQGFFSKR EANGCWGVFT SSTSKRAMES VELDKEKHSL RKALVVCRVI AGRVVKGLEK 360 MREMEGQSSF DSVAGKADCH SDIEELYSLS PRALLPCFIL IICKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726797.1 | 0.0 | PREDICTED: uncharacterized protein LOC107938217 | ||||
TrEMBL | A0A1U8MJ25 | 0.0 | A0A1U8MJ25_GOSHI; uncharacterized protein LOC107938217 | ||||
TrEMBL | A0A2P5Y114 | 0.0 | A0A2P5Y114_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G175600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25100 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-120 | C2H2 family protein |