PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1391
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 446aa    MW: 50045.7 Da    PI: 9.7924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1391genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08437236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     grW t+E++ll  av ++G+++W+++a+++  +Rt
      Gh_A05G1391  4 GRWGTWEELLLGGAVLRHGTRDWNLVASELR-TRT 37
                     9******************************.**9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.7E-7337IPR001005SANT/Myb domain
CDDcd001670.00331552No hitNo description
Gene3DG3DSA:1.20.920.102.2E-15250360IPR001487Bromodomain
SMARTSM002972.1E-13250357IPR001487Bromodomain
SuperFamilySSF473701.96E-17254359IPR001487Bromodomain
CDDcd043692.15E-14254348No hitNo description
PfamPF004392.4E-11263341IPR001487Bromodomain
PROSITE profilePS500149.656268338IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGTGRWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRTVAP FGFTPEICKA KYEDLQQRYS  60
GCKAWFEELR KQRMAELRQA LEKTEDSIGS LESKVEGLKA EKKDDSQVIY GSSQTESAIP  120
CLKSEGIEFS SKEKCKDRLS ASSFTQEAET NWPPHCQIPV AVPAEVMDVK QGDSLTSERE  180
QISSIDKLVN TFCGGRFLSI RKRRGKRKRK DCSKNAKEGS VGESEFLGPA DVANALWCKE  240
TSASSEDQNR GSSSEVIDDI MGIFSSIAKN DCTSVFRRRL DSQERGRYKK MIRQHRDFDT  300
IRSRIASKSI MSVKELFRDM LLVANNALVF YCKNTREYKS ALLLRHIVTA TLQQHLKELR  360
SKVPLHKPLA KPRSIHPSHH ERLGNTANNE TPVVVNSRGC KNTSNAESPP SMESSTFSAQ  420
PRNAGCGYAI QKSESPTKGR KRARAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202210RRGKRKRKD
2438444GRKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698754.10.0PREDICTED: uncharacterized protein LOC107914364
TrEMBLA0A1U8KDL50.0A0A1U8KDL5_GOSHI; uncharacterized protein LOC107914364
STRINGGorai.009G171600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-24DNA-binding bromodomain-containing protein