PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1339

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 321aa MW: 36109.8 Da PI: 9.5137

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1339	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.3	7.6e-33	68	208	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+Ptd+e++ e+L++kv ++ l + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Gh_A05G1339 68 LPAGVKFDPTDQEIL-EHLEAKVISDLrklhplL---DefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegsET 160 799*********9.899999876664664432...222222333336******.555666777**************74444655577 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v + +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Gh_A05G1339 161 RWHKTGKTRAVSV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 208 8*******9.9*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-37	63	227	IPR003441	NAC domain
PROSITE profile	PS51005	33.874	68	227	IPR003441	NAC domain
Pfam	PF02365	2.3E-15	69	208	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MTWCNNPDDD ARAIKLVATA TKETSLAVAA TSAASYTKIH EIQTIICPSC GFNIPYQDQT 60 GIHDLPGLPA GVKFDPTDQE ILEHLEAKVI SDLRKLHPLL DEFIPTLEGE NGICYTHPEK 120 LPGVSKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEEGSET RWHKTGKTRA VSVGGAVKGF 180 KKILVLYTNY GRQRKPEKTN WVMHQYHLGN NEEEKDGELV ISKVFYQTQP RQCGPSSVKY 240 TLDRKLKTRS RLHQNPNPMA KSSGSRGLVE YNNPPFIPYD DGSHHNRESP PQLIPNLVVQ 300 GDGSSFIRLT SDTSKGRVER K

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25684	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847204	0.0	KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603229.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1U8MZ15	0.0	A0A1U8MZ15_GOSHI; NAC domain-containing protein 73-like
STRING	Gorai.009G166300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-116	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]