PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 193aa    MW: 21183.5 Da    PI: 10.2482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1332genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-1966116255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd +    + +r++lg+f tae+Aa a+++a+ k++g
  Gh_A05G1332  66 HYRGVRRRP-WGKYAAEIRDSTR---HgARVWLGTFETAEQAALAYDKAAFKMRG 116
                  8********.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.35E-3065125No hitNo description
Gene3DG3DSA:3.30.730.108.6E-3265125IPR001471AP2/ERF domain
PROSITE profilePS5103223.80266124IPR001471AP2/ERF domain
SMARTSM003803.2E-3766130IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2366126IPR016177DNA-binding domain
PfamPF008472.4E-1466116IPR001471AP2/ERF domain
PRINTSPR003673.5E-116778IPR001471AP2/ERF domain
PRINTSPR003673.5E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MQSHSDNVLP FNENDSQDMF IYQVLNEANA HCLGINNLHH FHASQRNQTA VASSMLEPAR  60
TTAKKHYRGV RRRPWGKYAA EIRDSTRHGA RVWLGTFETA EQAALAYDKA AFKMRGSKAL  120
LNFPAELAAS SAQRILRPNS SSKSLAKTDL DSGSSSRTVS TGTSKSESES STTGKSHSKG  180
SESDHLNSIL KVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-3365124463ATERF1
3gcc_A9e-3365124463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605784.11e-142PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046814e-54PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A2P5Q2G61e-126A0A2P5Q2G6_GOSBA; Uncharacterized protein
STRINGGorai.009G165500.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-40ethylene responsive element binding factor 2